B6 x BTBR intercross data
Alan Attie and colleagues

clean data files

microarray_annot.csv: microarray annotation file
    (37,827 probes with genomic locations)
    reporterid          unique probe identifier
    probeid             another probe identifier
    sequencesourceid    identifier for the source of the probe
    a_gene_id           The key identifier for the probes, used in the microarray data
    probesequence       The probe sequence on the array
    pChromosome         Chromosome
    pStrand             Strand (1 or -1)
    pStart              bp of start of probe (in build mm9/NCBI37)
    pEnd                bp of end of probe (in build mm9/NCBI37)
    officialgenesymbol  gene symbol for gene containing the probe
    SNPids              IDs for SNPs within the probe (not necessarily segregating)
    NumofSNPs           Number of SNPs in the probe (not necessarily segregating)
    eg                  Entrez gene ID
    gobp.id             Gene Ontology biological process IDs, separated by ;
    gobp.term           Gene Ontology biological process terms, separted by ;
    gocc.id             Gene Ontology cellular component IDs, separated by ;
    gocc.term           Gene Ontology cellular component terms, separated by ;
    gomf.id             Gene Ontology molecular function IDs, separated by ;
    gomf.term           Gene Ontology molecular function terms, separated by ;
    path_id             KEGG pathway ID
    kegg.term           KEGG pathway terms
    pos.Mbp             probe position in Mbp (build mm9/NCBI37)
    pos.cM              interpolated cM position
    probe_use           1 if gene is known; 0 if not
    chr                 Chromosome (same as pChromosome)

genotypes_clean.csv: Genotype data + genetic map + sex/pgm phenotypes
    MouseNum    Mouse identifier
    Sex         Sex
    pgm         paternal grandmother (0 = B6xBTBR; 1 = BTBRxB6)
    id          Identical to MouseNum column

genetic_map.csv   Genetic map of markers (positions in cM)
physical_map.csv  Physical map of markers (positions in build mm9/NCBI37 Mbp)

gene expression microarray data: tissues adipose, gastroc, hypo, islet, kidney, liver
    tissue_int1_clean.csv      intensity 1 (pool)
    tissue_int2_clean.csv      intensity 2 (individual)
    tissue_mlratio_clean.csv   attenuated log10(individual/pool)
    tissue_batch_clean.csv     microarray batch covariates